PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g05310.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 258aa    MW: 28354.8 Da    PI: 4.7853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g05310.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1894145156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Vang08g05310.4  94 PSYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 145
                     57*****998.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.13E-3394154No hitNo description
PfamPF008472.4E-1394145IPR001471AP2/ERF domain
PROSITE profilePS5103223.30195152IPR001471AP2/ERF domain
SMARTSM003802.7E-3795158IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2295153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-3295153IPR001471AP2/ERF domain
PRINTSPR003672.0E-1096107IPR001471AP2/ERF domain
PRINTSPR003672.0E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MENDADFFNS FASTSTSTTS TTTTTTTTTP SIFIDTTNTS ISSTSSSSSS STSNSSNSDS  60
FTKQHSKTPT TSQTLLENEK ESKGCCKKRK LENPSYRGVR MRNWGKWVSE IREPRKKSRI  120
WLGTYPTAEM AARAHDVAAL AIKGHSAYLN FPELAQELPT PASTSPKDIQ AAAAKAANTP  180
FDVNHCQSTI EDEEREEEPR QTQNVSSSSS NSTNDDDTLF DLPDLFPDEL CSYSSSWHLC  240
AVGSGFRLEE SLFWENY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1696152360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516126.11e-120PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ73e-62ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0S3SVN30.0A0A0S3SVN3_PHAAN; Uncharacterized protein
STRINGGLYMA03G27050.13e-94(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-44ERF family protein